the gene database Search Results


ddr pathway gene set of the molecular signatures database (msigdb)  (Broad Institute Inc)
90
Broad Institute Inc ddr pathway gene set of the molecular signatures database (msigdb)
Ddr Pathway Gene Set Of The Molecular Signatures Database (Msigdb), supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/the+gene+database/ddr+pathway+gene+set+of+the+molecular+signatures+database++msigdb+/pmc08215613-50-12-18
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ddr pathway gene set of the molecular signatures database (msigdb) - by Bioz Stars, 2026-08
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database of the gene sequences (cdss) of the m. petroleiphilum pm1 genome (4,006 cdss on 17 june 2004)  (NimbleGen Systems GmbH)
90
NimbleGen Systems GmbH database of the gene sequences (cdss) of the m. petroleiphilum pm1 genome (4,006 cdss on 17 june 2004)
Database Of The Gene Sequences (Cdss) Of The M. Petroleiphilum Pm1 Genome (4,006 Cdss On 17 June 2004), supplied by NimbleGen Systems GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/the+gene+database/database+of+the+gene+sequences++cdss++of+the+m++petroleiphilum+pm1+genome++4+006+cdss+on+17+june+2004+/10__1128_slash_aem__01604___07-76-26-15
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database of the gene sequences (cdss) of the m. petroleiphilum pm1 genome (4,006 cdss on 17 june 2004) - by Bioz Stars, 2026-08
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the streptomyces spomt2884 gene (genbank protein database accession number kf420279)  (GenScript corporation)
90
GenScript corporation the streptomyces spomt2884 gene (genbank protein database accession number kf420279)
Construction and expression of <t>SpOMT2884</t> in E. coli . ( A ) Map of the expression vector pETDuet-SpOMT2884; ( B ) Sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) of recombinant E. coli harboring pETDuet-SpOMT2884. Crude proteins from whole cell lysis with 0 h induction (lane 1), 4 h induction (lane 2), and 8 h induction (lane 3) were separated with SDS-PAGE. Arrows indicate the expressed SpOMT2884. M represents the molecular weight markers.
The Streptomyces Spomt2884 Gene (Genbank Protein Database Accession Number Kf420279), supplied by GenScript corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/the+gene+database/the+streptomyces+spomt2884+gene++genbank+protein+database+accession+number+kf420279+/pmc04661928-72-1-24
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the streptomyces spomt2884 gene (genbank protein database accession number kf420279) - by Bioz Stars, 2026-08
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the molecular signatures database gene sets angiogenesis-m14493 and hallmark_ angiogenesis  (Broad Institute Inc)
90
Broad Institute Inc the molecular signatures database gene sets angiogenesis-m14493 and hallmark_ angiogenesis
Identification of AR-lncRNAs. (A-D) Heatmaps and volcano plots showing the differentially expressed lncRNAs (A, B) or genes (C, D) between ccRCC tissues and paracancerous tissues in the TCGA. In the heatmap, the red parts represent upregulated lncRNAs/genes, and the blue parts represent downregulated lncRNAs/genes. In the volcano plot, the green dots represent downregulated lncRNAs/genes, the red dots represent upregulated lncRNAs/genes, and the black dots represent lncRNAs/genes with no differential expression (log2 |FC| > 1, p < 0.05). (E) Venn diagram illustrating 39 <t>angiogenesis-related</t> genes identified from the TCGA, HALLMARK and GSEA databases. (F) Forest plot showing the 9 prognostic differentially expressed sAR-lncRNAs according to univariate COX regression analysis. (G) LASSO regression analysis was carried out to identify 5 sAR-lncRNAs. (H) The optimal LASSO model was constructed with the best parameter (λ=0.03). (I) Forest plot showing the 3 prognostic differentially expressed sAR-lncRNAs according to multivariate COX regression analysis. AR-lncRNAs, angiogenesis-related lncRNAs; ccRCC, clear cell renal cell carcinoma; TCGA, The Cancer Genome Atlas; sAR-lncRNAs, survival AR-lncRNAs.
The Molecular Signatures Database Gene Sets Angiogenesis M14493 And Hallmark Angiogenesis, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/the+gene+database/the+molecular+signatures+database+gene+sets+angiogenesis+m14493+and+hallmark++angiogenesis/pmc11134422-68-15-17
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the molecular signatures database gene sets angiogenesis-m14493 and hallmark_ angiogenesis - by Bioz Stars, 2026-08
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gsea analysis against the gene sets in biocarta database  (BioCarta)
90
BioCarta gsea analysis against the gene sets in biocarta database
Identification of AR-lncRNAs. (A-D) Heatmaps and volcano plots showing the differentially expressed lncRNAs (A, B) or genes (C, D) between ccRCC tissues and paracancerous tissues in the TCGA. In the heatmap, the red parts represent upregulated lncRNAs/genes, and the blue parts represent downregulated lncRNAs/genes. In the volcano plot, the green dots represent downregulated lncRNAs/genes, the red dots represent upregulated lncRNAs/genes, and the black dots represent lncRNAs/genes with no differential expression (log2 |FC| > 1, p < 0.05). (E) Venn diagram illustrating 39 <t>angiogenesis-related</t> genes identified from the TCGA, HALLMARK and GSEA databases. (F) Forest plot showing the 9 prognostic differentially expressed sAR-lncRNAs according to univariate COX regression analysis. (G) LASSO regression analysis was carried out to identify 5 sAR-lncRNAs. (H) The optimal LASSO model was constructed with the best parameter (λ=0.03). (I) Forest plot showing the 3 prognostic differentially expressed sAR-lncRNAs according to multivariate COX regression analysis. AR-lncRNAs, angiogenesis-related lncRNAs; ccRCC, clear cell renal cell carcinoma; TCGA, The Cancer Genome Atlas; sAR-lncRNAs, survival AR-lncRNAs.
Gsea Analysis Against The Gene Sets In Biocarta Database, supplied by BioCarta, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/the+gene+database/gsea+analysis+against+the+gene+sets+in+biocarta+database/pmc02974413-165-7-7
Average 90 stars, based on 1 article reviews
gsea analysis against the gene sets in biocarta database - by Bioz Stars, 2026-08
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pathways annotated by gene ontology, kegg, genmapp, and the molecular signature database  (Broad Institute Inc)
90
Broad Institute Inc pathways annotated by gene ontology, kegg, genmapp, and the molecular signature database
Identification of AR-lncRNAs. (A-D) Heatmaps and volcano plots showing the differentially expressed lncRNAs (A, B) or genes (C, D) between ccRCC tissues and paracancerous tissues in the TCGA. In the heatmap, the red parts represent upregulated lncRNAs/genes, and the blue parts represent downregulated lncRNAs/genes. In the volcano plot, the green dots represent downregulated lncRNAs/genes, the red dots represent upregulated lncRNAs/genes, and the black dots represent lncRNAs/genes with no differential expression (log2 |FC| > 1, p < 0.05). (E) Venn diagram illustrating 39 <t>angiogenesis-related</t> genes identified from the TCGA, HALLMARK and GSEA databases. (F) Forest plot showing the 9 prognostic differentially expressed sAR-lncRNAs according to univariate COX regression analysis. (G) LASSO regression analysis was carried out to identify 5 sAR-lncRNAs. (H) The optimal LASSO model was constructed with the best parameter (λ=0.03). (I) Forest plot showing the 3 prognostic differentially expressed sAR-lncRNAs according to multivariate COX regression analysis. AR-lncRNAs, angiogenesis-related lncRNAs; ccRCC, clear cell renal cell carcinoma; TCGA, The Cancer Genome Atlas; sAR-lncRNAs, survival AR-lncRNAs.
Pathways Annotated By Gene Ontology, Kegg, Genmapp, And The Molecular Signature Database, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/the+gene+database/pathways+annotated+by+gene+ontology++kegg++genmapp++and+the+molecular+signature+database/pmc02856555-267-5-19
Average 90 stars, based on 1 article reviews
pathways annotated by gene ontology, kegg, genmapp, and the molecular signature database - by Bioz Stars, 2026-08
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the human ncrna gene database (genecarna)  (LifeMap Sciences)
90
LifeMap Sciences the human ncrna gene database (genecarna)
Identification of AR-lncRNAs. (A-D) Heatmaps and volcano plots showing the differentially expressed lncRNAs (A, B) or genes (C, D) between ccRCC tissues and paracancerous tissues in the TCGA. In the heatmap, the red parts represent upregulated lncRNAs/genes, and the blue parts represent downregulated lncRNAs/genes. In the volcano plot, the green dots represent downregulated lncRNAs/genes, the red dots represent upregulated lncRNAs/genes, and the black dots represent lncRNAs/genes with no differential expression (log2 |FC| > 1, p < 0.05). (E) Venn diagram illustrating 39 <t>angiogenesis-related</t> genes identified from the TCGA, HALLMARK and GSEA databases. (F) Forest plot showing the 9 prognostic differentially expressed sAR-lncRNAs according to univariate COX regression analysis. (G) LASSO regression analysis was carried out to identify 5 sAR-lncRNAs. (H) The optimal LASSO model was constructed with the best parameter (λ=0.03). (I) Forest plot showing the 3 prognostic differentially expressed sAR-lncRNAs according to multivariate COX regression analysis. AR-lncRNAs, angiogenesis-related lncRNAs; ccRCC, clear cell renal cell carcinoma; TCGA, The Cancer Genome Atlas; sAR-lncRNAs, survival AR-lncRNAs.
The Human Ncrna Gene Database (Genecarna), supplied by LifeMap Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/the+gene+database/the+human+ncrna+gene+database++genecarna+/10__1016_slash_j__jds__2024__08__004-65-25-30
Average 90 stars, based on 1 article reviews
the human ncrna gene database (genecarna) - by Bioz Stars, 2026-08
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a gene expression database for the molecular pharmacology of cancer  (Scherf GmbH)
90
Scherf GmbH a gene expression database for the molecular pharmacology of cancer
Identification of AR-lncRNAs. (A-D) Heatmaps and volcano plots showing the differentially expressed lncRNAs (A, B) or genes (C, D) between ccRCC tissues and paracancerous tissues in the TCGA. In the heatmap, the red parts represent upregulated lncRNAs/genes, and the blue parts represent downregulated lncRNAs/genes. In the volcano plot, the green dots represent downregulated lncRNAs/genes, the red dots represent upregulated lncRNAs/genes, and the black dots represent lncRNAs/genes with no differential expression (log2 |FC| > 1, p < 0.05). (E) Venn diagram illustrating 39 <t>angiogenesis-related</t> genes identified from the TCGA, HALLMARK and GSEA databases. (F) Forest plot showing the 9 prognostic differentially expressed sAR-lncRNAs according to univariate COX regression analysis. (G) LASSO regression analysis was carried out to identify 5 sAR-lncRNAs. (H) The optimal LASSO model was constructed with the best parameter (λ=0.03). (I) Forest plot showing the 3 prognostic differentially expressed sAR-lncRNAs according to multivariate COX regression analysis. AR-lncRNAs, angiogenesis-related lncRNAs; ccRCC, clear cell renal cell carcinoma; TCGA, The Cancer Genome Atlas; sAR-lncRNAs, survival AR-lncRNAs.
A Gene Expression Database For The Molecular Pharmacology Of Cancer, supplied by Scherf GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/the+gene+database/a+gene+expression+database+for+the+molecular+pharmacology+of+cancer/pm22459768-465-16-1
Average 90 stars, based on 1 article reviews
a gene expression database for the molecular pharmacology of cancer - by Bioz Stars, 2026-08
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bac rp11566j3  (imaGenes GmbH)
90
imaGenes GmbH bac rp11566j3
Identification of AR-lncRNAs. (A-D) Heatmaps and volcano plots showing the differentially expressed lncRNAs (A, B) or genes (C, D) between ccRCC tissues and paracancerous tissues in the TCGA. In the heatmap, the red parts represent upregulated lncRNAs/genes, and the blue parts represent downregulated lncRNAs/genes. In the volcano plot, the green dots represent downregulated lncRNAs/genes, the red dots represent upregulated lncRNAs/genes, and the black dots represent lncRNAs/genes with no differential expression (log2 |FC| > 1, p < 0.05). (E) Venn diagram illustrating 39 <t>angiogenesis-related</t> genes identified from the TCGA, HALLMARK and GSEA databases. (F) Forest plot showing the 9 prognostic differentially expressed sAR-lncRNAs according to univariate COX regression analysis. (G) LASSO regression analysis was carried out to identify 5 sAR-lncRNAs. (H) The optimal LASSO model was constructed with the best parameter (λ=0.03). (I) Forest plot showing the 3 prognostic differentially expressed sAR-lncRNAs according to multivariate COX regression analysis. AR-lncRNAs, angiogenesis-related lncRNAs; ccRCC, clear cell renal cell carcinoma; TCGA, The Cancer Genome Atlas; sAR-lncRNAs, survival AR-lncRNAs.
Bac Rp11566j3, supplied by imaGenes GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/the+gene+database/bac+rp11566j3++chr+14++100+120+601+100+295+975+bp+in+the+ncbi+database++build+36++covering+thedlk1+gene/pm19250383-76-1-19
Average 90 stars, based on 1 article reviews
bac rp11566j3 - by Bioz Stars, 2026-08
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hmm database for the arra gene  (InterPro Inc)
90
InterPro Inc hmm database for the arra gene
Identification of AR-lncRNAs. (A-D) Heatmaps and volcano plots showing the differentially expressed lncRNAs (A, B) or genes (C, D) between ccRCC tissues and paracancerous tissues in the TCGA. In the heatmap, the red parts represent upregulated lncRNAs/genes, and the blue parts represent downregulated lncRNAs/genes. In the volcano plot, the green dots represent downregulated lncRNAs/genes, the red dots represent upregulated lncRNAs/genes, and the black dots represent lncRNAs/genes with no differential expression (log2 |FC| > 1, p < 0.05). (E) Venn diagram illustrating 39 <t>angiogenesis-related</t> genes identified from the TCGA, HALLMARK and GSEA databases. (F) Forest plot showing the 9 prognostic differentially expressed sAR-lncRNAs according to univariate COX regression analysis. (G) LASSO regression analysis was carried out to identify 5 sAR-lncRNAs. (H) The optimal LASSO model was constructed with the best parameter (λ=0.03). (I) Forest plot showing the 3 prognostic differentially expressed sAR-lncRNAs according to multivariate COX regression analysis. AR-lncRNAs, angiogenesis-related lncRNAs; ccRCC, clear cell renal cell carcinoma; TCGA, The Cancer Genome Atlas; sAR-lncRNAs, survival AR-lncRNAs.
Hmm Database For The Arra Gene, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/the+gene+database/hmm+database+for+the+arra+gene/pm40064231-97-39-45
Average 90 stars, based on 1 article reviews
hmm database for the arra gene - by Bioz Stars, 2026-08
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Image Search Results


Construction and expression of SpOMT2884 in E. coli . ( A ) Map of the expression vector pETDuet-SpOMT2884; ( B ) Sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) of recombinant E. coli harboring pETDuet-SpOMT2884. Crude proteins from whole cell lysis with 0 h induction (lane 1), 4 h induction (lane 2), and 8 h induction (lane 3) were separated with SDS-PAGE. Arrows indicate the expressed SpOMT2884. M represents the molecular weight markers.

Journal: International Journal of Molecular Sciences

Article Title: Production of Two Novel Methoxy-Isoflavones from Biotransformation of 8-Hydroxydaidzein by Recombinant Escherichia coli Expressing O -Methyltransferase SpOMT2884 from Streptomyces peucetius

doi: 10.3390/ijms161126070

Figure Lengend Snippet: Construction and expression of SpOMT2884 in E. coli . ( A ) Map of the expression vector pETDuet-SpOMT2884; ( B ) Sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) of recombinant E. coli harboring pETDuet-SpOMT2884. Crude proteins from whole cell lysis with 0 h induction (lane 1), 4 h induction (lane 2), and 8 h induction (lane 3) were separated with SDS-PAGE. Arrows indicate the expressed SpOMT2884. M represents the molecular weight markers.

Article Snippet: The Streptomyces SpOMT2884 gene (GenBank protein database accession number KF420279) was chemically synthesized with codon optimization based on the preferences of E. coli by GenScript (Piscataway, NJ, USA).

Techniques: Expressing, Plasmid Preparation, Polyacrylamide Gel Electrophoresis, SDS Page, Recombinant, Lysis, Molecular Weight

Ultra-performance liquid chromatography (UPLC) profiles of 8-hydroxydaidzein standard ( A ) and fermentation broth (( B ): 0 h induction; ( C ): 24 h induction) of recombinant E. coli expressing SpOMT2884. The recombinant strain was cultivated at 37 °C in shacking flasks with LeMaster and Richards minimal medium (LR medium) containing 100 μM 8-hydroxydaidzein. After induction with 0.5 mM isopropyl-β- d -thiogalactopyranoside (IPTG), aliquot samples of the fermentation were collected and analyzed with UPLC. The detailed protocols for fermentation and UPLC are described in Materials and Methods.

Journal: International Journal of Molecular Sciences

Article Title: Production of Two Novel Methoxy-Isoflavones from Biotransformation of 8-Hydroxydaidzein by Recombinant Escherichia coli Expressing O -Methyltransferase SpOMT2884 from Streptomyces peucetius

doi: 10.3390/ijms161126070

Figure Lengend Snippet: Ultra-performance liquid chromatography (UPLC) profiles of 8-hydroxydaidzein standard ( A ) and fermentation broth (( B ): 0 h induction; ( C ): 24 h induction) of recombinant E. coli expressing SpOMT2884. The recombinant strain was cultivated at 37 °C in shacking flasks with LeMaster and Richards minimal medium (LR medium) containing 100 μM 8-hydroxydaidzein. After induction with 0.5 mM isopropyl-β- d -thiogalactopyranoside (IPTG), aliquot samples of the fermentation were collected and analyzed with UPLC. The detailed protocols for fermentation and UPLC are described in Materials and Methods.

Article Snippet: The Streptomyces SpOMT2884 gene (GenBank protein database accession number KF420279) was chemically synthesized with codon optimization based on the preferences of E. coli by GenScript (Piscataway, NJ, USA).

Techniques: Liquid Chromatography, Recombinant, Expressing

Diagram of the biotransformation of 8-hydroxydaidzein by the recombinant E. coli expressing SpOMT2884.

Journal: International Journal of Molecular Sciences

Article Title: Production of Two Novel Methoxy-Isoflavones from Biotransformation of 8-Hydroxydaidzein by Recombinant Escherichia coli Expressing O -Methyltransferase SpOMT2884 from Streptomyces peucetius

doi: 10.3390/ijms161126070

Figure Lengend Snippet: Diagram of the biotransformation of 8-hydroxydaidzein by the recombinant E. coli expressing SpOMT2884.

Article Snippet: The Streptomyces SpOMT2884 gene (GenBank protein database accession number KF420279) was chemically synthesized with codon optimization based on the preferences of E. coli by GenScript (Piscataway, NJ, USA).

Techniques: Recombinant, Expressing

Identification of AR-lncRNAs. (A-D) Heatmaps and volcano plots showing the differentially expressed lncRNAs (A, B) or genes (C, D) between ccRCC tissues and paracancerous tissues in the TCGA. In the heatmap, the red parts represent upregulated lncRNAs/genes, and the blue parts represent downregulated lncRNAs/genes. In the volcano plot, the green dots represent downregulated lncRNAs/genes, the red dots represent upregulated lncRNAs/genes, and the black dots represent lncRNAs/genes with no differential expression (log2 |FC| > 1, p < 0.05). (E) Venn diagram illustrating 39 angiogenesis-related genes identified from the TCGA, HALLMARK and GSEA databases. (F) Forest plot showing the 9 prognostic differentially expressed sAR-lncRNAs according to univariate COX regression analysis. (G) LASSO regression analysis was carried out to identify 5 sAR-lncRNAs. (H) The optimal LASSO model was constructed with the best parameter (λ=0.03). (I) Forest plot showing the 3 prognostic differentially expressed sAR-lncRNAs according to multivariate COX regression analysis. AR-lncRNAs, angiogenesis-related lncRNAs; ccRCC, clear cell renal cell carcinoma; TCGA, The Cancer Genome Atlas; sAR-lncRNAs, survival AR-lncRNAs.

Journal: Journal of Cancer

Article Title: A Model to Predict Prognosis of Renal Cell Clear Cell Carcinoma Based on 3 Angiogenesis-related Long Non-coding RNAs

doi: 10.7150/jca.94685

Figure Lengend Snippet: Identification of AR-lncRNAs. (A-D) Heatmaps and volcano plots showing the differentially expressed lncRNAs (A, B) or genes (C, D) between ccRCC tissues and paracancerous tissues in the TCGA. In the heatmap, the red parts represent upregulated lncRNAs/genes, and the blue parts represent downregulated lncRNAs/genes. In the volcano plot, the green dots represent downregulated lncRNAs/genes, the red dots represent upregulated lncRNAs/genes, and the black dots represent lncRNAs/genes with no differential expression (log2 |FC| > 1, p < 0.05). (E) Venn diagram illustrating 39 angiogenesis-related genes identified from the TCGA, HALLMARK and GSEA databases. (F) Forest plot showing the 9 prognostic differentially expressed sAR-lncRNAs according to univariate COX regression analysis. (G) LASSO regression analysis was carried out to identify 5 sAR-lncRNAs. (H) The optimal LASSO model was constructed with the best parameter (λ=0.03). (I) Forest plot showing the 3 prognostic differentially expressed sAR-lncRNAs according to multivariate COX regression analysis. AR-lncRNAs, angiogenesis-related lncRNAs; ccRCC, clear cell renal cell carcinoma; TCGA, The Cancer Genome Atlas; sAR-lncRNAs, survival AR-lncRNAs.

Article Snippet: Angiogenesis-related genes (ARGs) were extracted from The Molecular Signatures Database gene sets ANGIOGENESIS-M14493 and HALLMARK_ ANGIOGENESIS (http://www. broad institute. org/gsea/msigdb/index.Jsp).

Techniques: Quantitative Proteomics, Construct